yiaD protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

yiaD

Lipoprotein. (239 aa)

Predicted Functional Partners:

lphA

0.952

tolB

0.887

tyrP_1

0.842

dotG

0.829

lolA

0.814

Lgra_0965

0.793

Lgra_0966

0.793

Lgra_1175

0.793

lolB

0.791

Lgra_2715

0.791

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_0965	Lgra_0966	Lgra_0965	Lgra_0966	Major outer membrane protein.	Major outer membrane protein.	0.517
Lgra_0965	lphA	Lgra_0965	Lgra_2712	Major outer membrane protein.	LphA (DotK).	0.793
Lgra_0965	yiaD	Lgra_0965	Lgra_2276	Major outer membrane protein.	Lipoprotein.	0.793
Lgra_0966	Lgra_0965	Lgra_0966	Lgra_0965	Major outer membrane protein.	Major outer membrane protein.	0.517
Lgra_0966	lphA	Lgra_0966	Lgra_2712	Major outer membrane protein.	LphA (DotK).	0.793
Lgra_0966	yiaD	Lgra_0966	Lgra_2276	Major outer membrane protein.	Lipoprotein.	0.793
Lgra_1175	lphA	Lgra_1175	Lgra_2712	Major outer membrane protein.	LphA (DotK).	0.793
Lgra_1175	yiaD	Lgra_1175	Lgra_2276	Major outer membrane protein.	Lipoprotein.	0.793
Lgra_2715	dotG	Lgra_2715	Lgra_2716	IcmK protein.	IcmE/DotG protein.	0.991
Lgra_2715	lphA	Lgra_2715	Lgra_2712	IcmK protein.	LphA (DotK).	0.940
Lgra_2715	tyrP_1	Lgra_2715	Lgra_2275	IcmK protein.	Tyrosine-specific transport protein.	0.455
Lgra_2715	yiaD	Lgra_2715	Lgra_2276	IcmK protein.	Lipoprotein.	0.791
dotG	Lgra_2715	Lgra_2716	Lgra_2715	IcmE/DotG protein.	IcmK protein.	0.991
dotG	lphA	Lgra_2716	Lgra_2712	IcmE/DotG protein.	LphA (DotK).	0.955
dotG	yiaD	Lgra_2716	Lgra_2276	IcmE/DotG protein.	Lipoprotein.	0.829
lolA	lolB	Lgra_2549	Lgra_0629	Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Molecular chaperone LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.	0.952
lolA	lphA	Lgra_2549	Lgra_2712	Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	LphA (DotK).	0.403
lolA	yiaD	Lgra_2549	Lgra_2276	Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Lipoprotein.	0.814
lolB	lolA	Lgra_0629	Lgra_2549	Molecular chaperone LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.	Outer-membrane lipoprotein carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.952
lolB	lphA	Lgra_0629	Lgra_2712	Molecular chaperone LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.	LphA (DotK).	0.400