Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0492 | Lgra_1551 | Lgra_0492 | Lgra_1551 | PPR repeat protein. | Saframycin Mx1 synthetase B. | 0.822 |
Lgra_0492 | Lgra_2195 | Lgra_0492 | Lgra_2195 | PPR repeat protein. | acyl-CoA synthetase. | 0.714 |
Lgra_0492 | Lgra_2421 | Lgra_0492 | Lgra_2421 | PPR repeat protein. | Ras family protein. | 0.995 |
Lgra_0492 | Lgra_2849 | Lgra_0492 | Lgra_2849 | PPR repeat protein. | PPR repeat protein. | 0.794 |
Lgra_0492 | dnaJ | Lgra_0492 | Lgra_2297 | PPR repeat protein. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.870 |
Lgra_0492 | dnaK | Lgra_0492 | Lgra_2296 | PPR repeat protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.988 |
Lgra_0492 | htpB | Lgra_0492 | Lgra_0793 | PPR repeat protein. | Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.457 |
Lgra_0492 | htpG | Lgra_0492 | Lgra_3229 | PPR repeat protein. | Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity. | 0.993 |
Lgra_0492 | tycC_1 | Lgra_0492 | Lgra_0545 | PPR repeat protein. | Non-ribosomal peptide synthase. | 0.707 |
Lgra_1551 | Lgra_0492 | Lgra_1551 | Lgra_0492 | Saframycin Mx1 synthetase B. | PPR repeat protein. | 0.822 |
Lgra_1551 | Lgra_2195 | Lgra_1551 | Lgra_2195 | Saframycin Mx1 synthetase B. | acyl-CoA synthetase. | 0.999 |
Lgra_1551 | Lgra_2421 | Lgra_1551 | Lgra_2421 | Saframycin Mx1 synthetase B. | Ras family protein. | 0.674 |
Lgra_1551 | Lgra_2849 | Lgra_1551 | Lgra_2849 | Saframycin Mx1 synthetase B. | PPR repeat protein. | 0.822 |
Lgra_1551 | dnaJ | Lgra_1551 | Lgra_2297 | Saframycin Mx1 synthetase B. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.929 |
Lgra_1551 | dnaK | Lgra_1551 | Lgra_2296 | Saframycin Mx1 synthetase B. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.409 |
Lgra_1551 | htpB | Lgra_1551 | Lgra_0793 | Saframycin Mx1 synthetase B. | Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.503 |
Lgra_1551 | tycC_1 | Lgra_1551 | Lgra_0545 | Saframycin Mx1 synthetase B. | Non-ribosomal peptide synthase. | 0.999 |
Lgra_2195 | Lgra_0492 | Lgra_2195 | Lgra_0492 | acyl-CoA synthetase. | PPR repeat protein. | 0.714 |
Lgra_2195 | Lgra_1551 | Lgra_2195 | Lgra_1551 | acyl-CoA synthetase. | Saframycin Mx1 synthetase B. | 0.999 |
Lgra_2195 | Lgra_2421 | Lgra_2195 | Lgra_2421 | acyl-CoA synthetase. | Ras family protein. | 0.405 |
page 1 of 5