Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_2054 | dat | Lgra_2054 | Lgra_2765 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Aminodeoxychorismate lyase. | 0.711 |
Lgra_2054 | pdhB_2 | Lgra_2054 | Lgra_0814 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.766 |
Lgra_2054 | ybaO | Lgra_2054 | Lgra_2364 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Hypothetical protein. | 0.654 |
Lgra_2360 | Lgra_2361 | Lgra_2360 | Lgra_2361 | Hypothetical protein. | Hypothetical protein. | 0.795 |
Lgra_2360 | oprM_3 | Lgra_2360 | Lgra_2363 | Hypothetical protein. | Outer membrane efflux protein. | 0.698 |
Lgra_2360 | ybaO | Lgra_2360 | Lgra_2364 | Hypothetical protein. | Hypothetical protein. | 0.410 |
Lgra_2361 | Lgra_2360 | Lgra_2361 | Lgra_2360 | Hypothetical protein. | Hypothetical protein. | 0.795 |
Lgra_2361 | oprM_3 | Lgra_2361 | Lgra_2363 | Hypothetical protein. | Outer membrane efflux protein. | 0.612 |
Lgra_2361 | ybaO | Lgra_2361 | Lgra_2364 | Hypothetical protein. | Hypothetical protein. | 0.410 |
birA | pdhB_2 | Lgra_1845 | Lgra_0814 | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.677 |
birA | ybaO | Lgra_1845 | Lgra_2364 | biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | Hypothetical protein. | 0.708 |
dat | Lgra_2054 | Lgra_2765 | Lgra_2054 | Aminodeoxychorismate lyase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.711 |
dat | pdhB_2 | Lgra_2765 | Lgra_0814 | Aminodeoxychorismate lyase. | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 0.795 |
dat | putA | Lgra_2765 | Lgra_1990 | Aminodeoxychorismate lyase. | Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.774 |
dat | trpE | Lgra_2765 | Lgra_2444 | Aminodeoxychorismate lyase. | Anthranilate synthase. | 0.837 |
dat | ybaO | Lgra_2765 | Lgra_2364 | Aminodeoxychorismate lyase. | Hypothetical protein. | 0.435 |
oprM_3 | Lgra_2360 | Lgra_2363 | Lgra_2360 | Outer membrane efflux protein. | Hypothetical protein. | 0.698 |
oprM_3 | Lgra_2361 | Lgra_2363 | Lgra_2361 | Outer membrane efflux protein. | Hypothetical protein. | 0.612 |
oprM_3 | ybaO | Lgra_2363 | Lgra_2364 | Outer membrane efflux protein. | Hypothetical protein. | 0.517 |
pdhB_2 | Lgra_2054 | Lgra_0814 | Lgra_2054 | Pyruvate/2-oxoglutarate dehydrogenase subunit E1. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.766 |
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