STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_2434Patatin-like phospholipase. (384 aa)    
Predicted Functional Partners:
Lgra_2433
Hypothetical protein.
       0.773
bdhA
3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.764
adc_2
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
     0.706
adc_1
Acetoacetate decarboxylase.
 
     0.700
ndh_2
Respiratory NADH dehydrogenase 2/cupric reductase.
       0.565
Lgra_3062
Hypothetical protein.
  
     0.539
Lgra_2195
acyl-CoA synthetase.
    
  0.487
phbC_3
Polyhydroxyalkanoic synthase.
  
     0.470
phbC_1
PHA synthase.
  
     0.469
phbC_2
PHA synthase.
  
     0.464
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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