Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
argD | argE_1 | Lgra_1181 | Lgra_1594 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Acetylornithine deacetylase. | 0.761 |
argD | argE_2 | Lgra_1181 | Lgra_2371 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Acetylornithine deacetylase. | 0.761 |
argD | argF | Lgra_1181 | Lgra_0552 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Ornithine carbamoyltransferase. | 0.995 |
argD | argG | Lgra_1181 | Lgra_2442 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.940 |
argD | argH | Lgra_1181 | Lgra_2443 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Argininosuccinate lyase. | 0.944 |
argD | argR | Lgra_1181 | Lgra_2438 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Arginine repressor ArgR; Regulates arginine biosynthesis genes. | 0.763 |
argD | lysAC | Lgra_1181 | Lgra_1694 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.737 |
argE_1 | argD | Lgra_1594 | Lgra_1181 | Acetylornithine deacetylase. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.761 |
argE_1 | argF | Lgra_1594 | Lgra_0552 | Acetylornithine deacetylase. | Ornithine carbamoyltransferase. | 0.888 |
argE_1 | argG | Lgra_1594 | Lgra_2442 | Acetylornithine deacetylase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.838 |
argE_1 | argH | Lgra_1594 | Lgra_2443 | Acetylornithine deacetylase. | Argininosuccinate lyase. | 0.444 |
argE_1 | lysAC | Lgra_1594 | Lgra_1694 | Acetylornithine deacetylase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.564 |
argE_2 | argD | Lgra_2371 | Lgra_1181 | Acetylornithine deacetylase. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.761 |
argE_2 | argF | Lgra_2371 | Lgra_0552 | Acetylornithine deacetylase. | Ornithine carbamoyltransferase. | 0.888 |
argE_2 | argG | Lgra_2371 | Lgra_2442 | Acetylornithine deacetylase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.838 |
argE_2 | argH | Lgra_2371 | Lgra_2443 | Acetylornithine deacetylase. | Argininosuccinate lyase. | 0.444 |
argE_2 | lysAC | Lgra_2371 | Lgra_1694 | Acetylornithine deacetylase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.564 |
argF | argD | Lgra_0552 | Lgra_1181 | Ornithine carbamoyltransferase. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.995 |
argF | argE_1 | Lgra_0552 | Lgra_1594 | Ornithine carbamoyltransferase. | Acetylornithine deacetylase. | 0.888 |
argF | argE_2 | Lgra_0552 | Lgra_2371 | Ornithine carbamoyltransferase. | Acetylornithine deacetylase. | 0.888 |
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