Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_2054 | fadA | Lgra_2054 | Lgra_2556 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.749 |
Lgra_2054 | fadB | Lgra_2054 | Lgra_2557 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.763 |
Lgra_2054 | fadE_2 | Lgra_2054 | Lgra_2453 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Acyl coenzyme A dehydrogenase. | 0.754 |
Lgra_2054 | paaF | Lgra_2054 | Lgra_2961 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | enoyl-CoA hydratase. | 0.705 |
Lgra_2054 | pta | Lgra_2054 | Lgra_2415 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Phosphate acetyl/butaryl transferase. | 0.788 |
Lgra_2054 | yfcX | Lgra_2054 | Lgra_0258 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.763 |
Lgra_2054 | yfcY | Lgra_2054 | Lgra_0257 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | beta-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.749 |
Lgra_2452 | fadE_2 | Lgra_2452 | Lgra_2453 | Hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Acyl coenzyme A dehydrogenase. | 0.788 |
Lgra_2452 | pta | Lgra_2452 | Lgra_2415 | Hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | Phosphate acetyl/butaryl transferase. | 0.705 |
etfA | etfB | Lgra_2940 | Lgra_2939 | Electron transfer flavoprotein, alpha subunit. | Electron transfer flavoprotein beta-subunit (Beta-ETF). | 0.999 |
etfA | fadA | Lgra_2940 | Lgra_2556 | Electron transfer flavoprotein, alpha subunit. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.479 |
etfA | fadB | Lgra_2940 | Lgra_2557 | Electron transfer flavoprotein, alpha subunit. | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.902 |
etfA | fadE_2 | Lgra_2940 | Lgra_2453 | Electron transfer flavoprotein, alpha subunit. | Acyl coenzyme A dehydrogenase. | 0.845 |
etfA | paaF | Lgra_2940 | Lgra_2961 | Electron transfer flavoprotein, alpha subunit. | enoyl-CoA hydratase. | 0.541 |
etfA | pta | Lgra_2940 | Lgra_2415 | Electron transfer flavoprotein, alpha subunit. | Phosphate acetyl/butaryl transferase. | 0.517 |
etfA | yfcX | Lgra_2940 | Lgra_0258 | Electron transfer flavoprotein, alpha subunit. | Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.902 |
etfA | yfcY | Lgra_2940 | Lgra_0257 | Electron transfer flavoprotein, alpha subunit. | beta-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.479 |
etfB | etfA | Lgra_2939 | Lgra_2940 | Electron transfer flavoprotein beta-subunit (Beta-ETF). | Electron transfer flavoprotein, alpha subunit. | 0.999 |
etfB | fadB | Lgra_2939 | Lgra_2557 | Electron transfer flavoprotein beta-subunit (Beta-ETF). | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.856 |
etfB | fadE_2 | Lgra_2939 | Lgra_2453 | Electron transfer flavoprotein beta-subunit (Beta-ETF). | Acyl coenzyme A dehydrogenase. | 0.830 |
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