STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_2482Pyoverdine biosynthesis protein. (347 aa)    
Predicted Functional Partners:
pvcB
Pyoverdine biosynthesis protein PvcB.
 
 0.959
Lgra_1516
Pyoverdine biosynthesis protein PvcA.
  
  
 
0.808
thi
Thiamine biosynthesis protein NMT-1.
  
     0.724
Lgra_0906
Prolyl oligopeptidase; Belongs to the UPF0255 family.
  
     0.707
mhpA
FAD monooxygenase.
 
     0.643
Lgra_1714
5-carboxyvanillate decarboxylase.
  
     0.578
yaiI
Hypothetical protein; Belongs to the UPF0178 family.
       0.486
hemG
Protoporphyrinogen oxidase.
  
     0.447
Lgra_2656
Ankyrin repeat-containing protein.
  
     0.435
Lgra_1931
Endonuclease/Exonuclease/phosphatase family protein.
  
     0.433
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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