Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0569 | sidJ_1 | Lgra_0569 | Lgra_2534 | Hypothetical protein. | Substrate of the Dot/Icm secretion system. | 0.516 |
Lgra_0950 | sidJ_1 | Lgra_0950 | Lgra_2534 | Hypothetical protein. | Substrate of the Dot/Icm secretion system. | 0.516 |
Lgra_0950 | smc_2 | Lgra_0950 | Lgra_2944 | Hypothetical protein. | Chromosome partition protein Smc. | 0.470 |
Lgra_1287 | sidJ_1 | Lgra_1287 | Lgra_2534 | Coiled-coil protein. | Substrate of the Dot/Icm secretion system. | 0.516 |
Lgra_1291 | sidJ_1 | Lgra_1291 | Lgra_2534 | Hypothetical protein. | Substrate of the Dot/Icm secretion system. | 0.516 |
Lgra_2536 | sidJ_1 | Lgra_2536 | Lgra_2534 | Hypothetical protein. | Substrate of the Dot/Icm secretion system. | 0.645 |
laiE | sidJ_1 | Lgra_2533 | Lgra_2534 | SdeA protein. | Substrate of the Dot/Icm secretion system. | 0.639 |
sidE | sidE_3 | Lgra_0931 | Lgra_0932 | SidE protein. | Dot/Icm substrate SidE. | 0.416 |
sidE | sidJ_1 | Lgra_0931 | Lgra_2534 | SidE protein. | Substrate of the Dot/Icm secretion system. | 0.645 |
sidE_3 | sidE | Lgra_0932 | Lgra_0931 | Dot/Icm substrate SidE. | SidE protein. | 0.416 |
sidE_3 | sidJ_1 | Lgra_0932 | Lgra_2534 | Dot/Icm substrate SidE. | Substrate of the Dot/Icm secretion system. | 0.645 |
sidJ_1 | Lgra_0569 | Lgra_2534 | Lgra_0569 | Substrate of the Dot/Icm secretion system. | Hypothetical protein. | 0.516 |
sidJ_1 | Lgra_0950 | Lgra_2534 | Lgra_0950 | Substrate of the Dot/Icm secretion system. | Hypothetical protein. | 0.516 |
sidJ_1 | Lgra_1287 | Lgra_2534 | Lgra_1287 | Substrate of the Dot/Icm secretion system. | Coiled-coil protein. | 0.516 |
sidJ_1 | Lgra_1291 | Lgra_2534 | Lgra_1291 | Substrate of the Dot/Icm secretion system. | Hypothetical protein. | 0.516 |
sidJ_1 | Lgra_2536 | Lgra_2534 | Lgra_2536 | Substrate of the Dot/Icm secretion system. | Hypothetical protein. | 0.645 |
sidJ_1 | laiE | Lgra_2534 | Lgra_2533 | Substrate of the Dot/Icm secretion system. | SdeA protein. | 0.639 |
sidJ_1 | sidE | Lgra_2534 | Lgra_0931 | Substrate of the Dot/Icm secretion system. | SidE protein. | 0.645 |
sidJ_1 | sidE_3 | Lgra_2534 | Lgra_0932 | Substrate of the Dot/Icm secretion system. | Dot/Icm substrate SidE. | 0.645 |
sidJ_1 | smc_1 | Lgra_2534 | Lgra_2734 | Substrate of the Dot/Icm secretion system. | Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.516 |
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