Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1731 | Lgra_2006 | Lgra_1731 | Lgra_2006 | Hypothetical protein. | Ankyrin repeat protein. | 0.753 |
Lgra_1731 | Lgra_2577 | Lgra_1731 | Lgra_2577 | Hypothetical protein. | Phosphoesterase. | 0.735 |
Lgra_2006 | Lgra_1731 | Lgra_2006 | Lgra_1731 | Ankyrin repeat protein. | Hypothetical protein. | 0.753 |
Lgra_2006 | Lgra_2577 | Lgra_2006 | Lgra_2577 | Ankyrin repeat protein. | Phosphoesterase. | 0.703 |
Lgra_2576 | Lgra_2577 | Lgra_2576 | Lgra_2577 | Hypothetical protein. | Phosphoesterase. | 0.790 |
Lgra_2577 | Lgra_1731 | Lgra_2577 | Lgra_1731 | Phosphoesterase. | Hypothetical protein. | 0.735 |
Lgra_2577 | Lgra_2006 | Lgra_2577 | Lgra_2006 | Phosphoesterase. | Ankyrin repeat protein. | 0.703 |
Lgra_2577 | Lgra_2576 | Lgra_2577 | Lgra_2576 | Phosphoesterase. | Hypothetical protein. | 0.790 |
Lgra_2577 | bvgS | Lgra_2577 | Lgra_1355 | Phosphoesterase. | Sensory box histidine kinase/response regulator. | 0.689 |
Lgra_2577 | evgS | Lgra_2577 | Lgra_0609 | Phosphoesterase. | Sensory box histidine kinase/response regulator. | 0.739 |
Lgra_2577 | gmr_1 | Lgra_2577 | Lgra_2086 | Phosphoesterase. | Inner membrane protein. | 0.693 |
Lgra_2577 | gmr_3 | Lgra_2577 | Lgra_3322 | Phosphoesterase. | GGDEF domain-containing sensory box protein. | 0.690 |
Lgra_2577 | gmr_4 | Lgra_2577 | Lgra_1243 | Phosphoesterase. | Hypothetical protein. | 0.690 |
Lgra_2577 | pleD_2 | Lgra_2577 | Lgra_1316 | Phosphoesterase. | Regulatory protein (GGDEF domain). | 0.691 |
Lgra_2577 | spo0F | Lgra_2577 | Lgra_1242 | Phosphoesterase. | Hypothetical protein. | 0.737 |
bvgS | Lgra_2577 | Lgra_1355 | Lgra_2577 | Sensory box histidine kinase/response regulator. | Phosphoesterase. | 0.689 |
bvgS | evgS | Lgra_1355 | Lgra_0609 | Sensory box histidine kinase/response regulator. | Sensory box histidine kinase/response regulator. | 0.999 |
bvgS | gmr_1 | Lgra_1355 | Lgra_2086 | Sensory box histidine kinase/response regulator. | Inner membrane protein. | 0.965 |
bvgS | gmr_3 | Lgra_1355 | Lgra_3322 | Sensory box histidine kinase/response regulator. | GGDEF domain-containing sensory box protein. | 0.999 |
bvgS | gmr_4 | Lgra_1355 | Lgra_1243 | Sensory box histidine kinase/response regulator. | Hypothetical protein. | 0.999 |
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