Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbJConjugal transfer protein trbJ precursor. (245 aa)    
Predicted Functional Partners:
trbG
Conjugal transfer protein trbG precursor.
    
 0.966
virB
LvhB11.
    
 0.965
Lgra_2622
Conjugal transfer protein TrbC.
    
 0.964
trbF
Conjugal transfer protein trbF.
    
 0.963
Lgra_2617
Conjugal transfer TrbH protein.
    
  0.962
trbL
Conjugal transfer protein trbL.
    
 0.961
trbE
Conjugal transfer protein trbE precursor.
   
 0.941
trbI
Conjugal transfer protein trbI.
   
 0.936
trbD
Conjugal transfer protein trbD.
    
 0.914
traG
Conjugal transfer protein TraG.
     
 0.792
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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