Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbEConjugal transfer protein trbE precursor. (845 aa)    
Predicted Functional Partners:
trbI
Conjugal transfer protein trbI.
 
 0.996
trbG
Conjugal transfer protein trbG precursor.
 
 
 0.995
virB
LvhB11.
 
  
 0.991
trbF
Conjugal transfer protein trbF.
 
  
 0.983
trbD
Conjugal transfer protein trbD.
 
  
 0.982
trbL
Conjugal transfer protein trbL.
 
  
 0.967
traF
Conjugal transfer protein TraF.
 
   
 0.947
traG
Conjugal transfer protein TraG.
 
  
 0.943
trbJ
Conjugal transfer protein trbJ precursor.
   
 0.941
Lgra_2622
Conjugal transfer protein TrbC.
   
 0.939
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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