Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_2679 | Lgra_2680 | Lgra_2679 | Lgra_2680 | Phosphatase. | Hypothetical protein. | 0.766 |
Lgra_2679 | Lgra_2681 | Lgra_2679 | Lgra_2681 | Phosphatase. | SURF1 family protein. | 0.581 |
Lgra_2679 | Lgra_2682 | Lgra_2679 | Lgra_2682 | Phosphatase. | Hypothetical protein. | 0.581 |
Lgra_2679 | Lgra_2683 | Lgra_2679 | Lgra_2683 | Phosphatase. | Cytochrome c oxidase assembly protein. | 0.581 |
Lgra_2679 | Lgra_2685 | Lgra_2679 | Lgra_2685 | Phosphatase. | SCO1/SenC family transporter protein. | 0.416 |
Lgra_2679 | ctaB | Lgra_2679 | Lgra_2684 | Phosphatase. | Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.581 |
Lgra_2679 | deaD | Lgra_2679 | Lgra_2678 | Phosphatase. | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.444 |
Lgra_2680 | Lgra_2679 | Lgra_2680 | Lgra_2679 | Hypothetical protein. | Phosphatase. | 0.766 |
Lgra_2680 | Lgra_2681 | Lgra_2680 | Lgra_2681 | Hypothetical protein. | SURF1 family protein. | 0.811 |
Lgra_2680 | Lgra_2682 | Lgra_2680 | Lgra_2682 | Hypothetical protein. | Hypothetical protein. | 0.719 |
Lgra_2680 | Lgra_2683 | Lgra_2680 | Lgra_2683 | Hypothetical protein. | Cytochrome c oxidase assembly protein. | 0.856 |
Lgra_2680 | Lgra_2685 | Lgra_2680 | Lgra_2685 | Hypothetical protein. | SCO1/SenC family transporter protein. | 0.427 |
Lgra_2680 | ctaB | Lgra_2680 | Lgra_2684 | Hypothetical protein. | Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.705 |
Lgra_2680 | deaD | Lgra_2680 | Lgra_2678 | Hypothetical protein. | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.415 |
Lgra_2681 | Lgra_2679 | Lgra_2681 | Lgra_2679 | SURF1 family protein. | Phosphatase. | 0.581 |
Lgra_2681 | Lgra_2680 | Lgra_2681 | Lgra_2680 | SURF1 family protein. | Hypothetical protein. | 0.811 |
Lgra_2681 | Lgra_2682 | Lgra_2681 | Lgra_2682 | SURF1 family protein. | Hypothetical protein. | 0.979 |
Lgra_2681 | Lgra_2683 | Lgra_2681 | Lgra_2683 | SURF1 family protein. | Cytochrome c oxidase assembly protein. | 0.994 |
Lgra_2681 | Lgra_2685 | Lgra_2681 | Lgra_2685 | SURF1 family protein. | SCO1/SenC family transporter protein. | 0.780 |
Lgra_2681 | ctaB | Lgra_2681 | Lgra_2684 | SURF1 family protein. | Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.970 |
page 1 of 3