Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_1191 | gltT | Lgra_1191 | Lgra_2730 | Integral membrane protein. | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.494 |
Lgra_2729 | Lgra_2731 | Lgra_2729 | Lgra_2731 | Phage shock protein C, PspC. | Hypothetical protein. | 0.540 |
Lgra_2729 | bcp | Lgra_2729 | Lgra_2732 | Phage shock protein C, PspC. | Acetylpolyamine aminohydrolase. | 0.406 |
Lgra_2729 | gltT | Lgra_2729 | Lgra_2730 | Phage shock protein C, PspC. | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.795 |
Lgra_2731 | Lgra_2729 | Lgra_2731 | Lgra_2729 | Hypothetical protein. | Phage shock protein C, PspC. | 0.540 |
Lgra_2731 | bcp | Lgra_2731 | Lgra_2732 | Hypothetical protein. | Acetylpolyamine aminohydrolase. | 0.569 |
Lgra_2731 | gltT | Lgra_2731 | Lgra_2730 | Hypothetical protein. | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.543 |
bcp | Lgra_2729 | Lgra_2732 | Lgra_2729 | Acetylpolyamine aminohydrolase. | Phage shock protein C, PspC. | 0.406 |
bcp | Lgra_2731 | Lgra_2732 | Lgra_2731 | Acetylpolyamine aminohydrolase. | Hypothetical protein. | 0.569 |
bcp | gltT | Lgra_2732 | Lgra_2730 | Acetylpolyamine aminohydrolase. | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.405 |
fadB | gltT | Lgra_2557 | Lgra_2730 | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.460 |
fadB | yfcX | Lgra_2557 | Lgra_0258 | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.849 |
gltT | Lgra_1191 | Lgra_2730 | Lgra_1191 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Integral membrane protein. | 0.494 |
gltT | Lgra_2729 | Lgra_2730 | Lgra_2729 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Phage shock protein C, PspC. | 0.795 |
gltT | Lgra_2731 | Lgra_2730 | Lgra_2731 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Hypothetical protein. | 0.543 |
gltT | bcp | Lgra_2730 | Lgra_2732 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Acetylpolyamine aminohydrolase. | 0.405 |
gltT | fadB | Lgra_2730 | Lgra_2557 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.460 |
gltT | sdhD | Lgra_2730 | Lgra_0643 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.555 |
gltT | yfcX | Lgra_2730 | Lgra_0258 | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.460 |
sdhD | gltT | Lgra_0643 | Lgra_2730 | Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | Sodium:dicarboxylate symporter protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.555 |
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