bcp protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

bcp

Acetylpolyamine aminohydrolase. (429 aa)

Predicted Functional Partners:

yjeA

0.945

Lgra_2421

0.944

Lgra_1543

0.928

htpG

0.877

puo_1

0.876

Lgra_2787

0.861

smc_2

0.852

puo_2

0.849

Lgra_2656

0.835

ppiB

0.834

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_1543	Lgra_2421	Lgra_1543	Lgra_2421	Protein phosphatase 2C.	Ras family protein.	0.973
Lgra_1543	Lgra_2656	Lgra_1543	Lgra_2656	Protein phosphatase 2C.	Ankyrin repeat-containing protein.	0.862
Lgra_1543	Lgra_2787	Lgra_1543	Lgra_2787	Protein phosphatase 2C.	Ankyrin repeat protein.	0.834
Lgra_1543	bcp	Lgra_1543	Lgra_2732	Protein phosphatase 2C.	Acetylpolyamine aminohydrolase.	0.928
Lgra_1543	ppiB	Lgra_1543	Lgra_0713	Protein phosphatase 2C.	Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.822
Lgra_1543	smc_2	Lgra_1543	Lgra_2944	Protein phosphatase 2C.	Chromosome partition protein Smc.	0.748
Lgra_1543	yjeA	Lgra_1543	Lgra_2188	Protein phosphatase 2C.	Endo-1,4-beta-xylanase.	0.866
Lgra_2421	Lgra_1543	Lgra_2421	Lgra_1543	Ras family protein.	Protein phosphatase 2C.	0.973
Lgra_2421	Lgra_2656	Lgra_2421	Lgra_2656	Ras family protein.	Ankyrin repeat-containing protein.	0.969
Lgra_2421	Lgra_2787	Lgra_2421	Lgra_2787	Ras family protein.	Ankyrin repeat protein.	0.849
Lgra_2421	bcp	Lgra_2421	Lgra_2732	Ras family protein.	Acetylpolyamine aminohydrolase.	0.944
Lgra_2421	htpG	Lgra_2421	Lgra_3229	Ras family protein.	Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.	0.640
Lgra_2421	ppiB	Lgra_2421	Lgra_0713	Ras family protein.	Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.923
Lgra_2656	Lgra_1543	Lgra_2656	Lgra_1543	Ankyrin repeat-containing protein.	Protein phosphatase 2C.	0.862
Lgra_2656	Lgra_2421	Lgra_2656	Lgra_2421	Ankyrin repeat-containing protein.	Ras family protein.	0.969
Lgra_2656	bcp	Lgra_2656	Lgra_2732	Ankyrin repeat-containing protein.	Acetylpolyamine aminohydrolase.	0.835
Lgra_2656	htpG	Lgra_2656	Lgra_3229	Ankyrin repeat-containing protein.	Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.	0.421
Lgra_2656	ppiB	Lgra_2656	Lgra_0713	Ankyrin repeat-containing protein.	Peptidyl-prolyl cis-trans isomerase B (cyclophilin-type PPIase family); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.791
Lgra_2656	yjeA	Lgra_2656	Lgra_2188	Ankyrin repeat-containing protein.	Endo-1,4-beta-xylanase.	0.812
Lgra_2787	Lgra_1543	Lgra_2787	Lgra_1543	Ankyrin repeat protein.	Protein phosphatase 2C.	0.834