yhbH protein (Legionella gratiana) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

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[Homology]

Score

yhbH

Ribosome-associated, sigma 54 modulation protein. (97 aa)

Predicted Functional Partners:

rpmG

0.964

rpmB

0.964

rpsF

0.963

rpsI

0.963

rpsO

0.961

rpsR

0.960

rpsC

0.960

rpsQ

0.960

rpsB

0.960

rpsA

0.936

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmB	rpmG	Lgra_2785	Lgra_2784	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.999
rpmB	rpsA	Lgra_2785	Lgra_0278	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.984
rpmB	rpsB	Lgra_2785	Lgra_3361	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.995
rpmB	rpsC	Lgra_2785	Lgra_0375	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.991
rpmB	rpsF	Lgra_2785	Lgra_0262	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.997
rpmB	rpsI	Lgra_2785	Lgra_0699	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rpmB	rpsO	Lgra_2785	Lgra_0982	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
rpmB	rpsQ	Lgra_2785	Lgra_0378	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.985
rpmB	rpsR	Lgra_2785	Lgra_0263	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.996
rpmB	yhbH	Lgra_2785	Lgra_2782	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	Ribosome-associated, sigma 54 modulation protein.	0.964
rpmG	rpmB	Lgra_2784	Lgra_2785	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rpmG	rpsA	Lgra_2784	Lgra_0278	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.957
rpmG	rpsB	Lgra_2784	Lgra_3361	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.984
rpmG	rpsC	Lgra_2784	Lgra_0375	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.994
rpmG	rpsF	Lgra_2784	Lgra_0262	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rpmG	rpsI	Lgra_2784	Lgra_0699	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rpmG	rpsO	Lgra_2784	Lgra_0982	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.994
rpmG	rpsQ	Lgra_2784	Lgra_0378	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.985
rpmG	rpsR	Lgra_2784	Lgra_0263	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.996
rpmG	yhbH	Lgra_2784	Lgra_2782	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	Ribosome-associated, sigma 54 modulation protein.	0.964