Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Lgra_2787Ankyrin repeat protein. (464 aa)    
Predicted Functional Partners:
bcp
Acetylpolyamine aminohydrolase.
  
 
  0.861
yjeA
Endo-1,4-beta-xylanase.
  
 
  0.855
Lgra_2421
Ras family protein.
    
  0.849
Lgra_2200
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
 
  0.841
Lgra_1543
Protein phosphatase 2C.
  
 
  0.834
Lgra_1550
PAP2 superfamily protein.
  
 
  0.818
Lgra_1596
cNMP binding domain-containing protein.
  
 
  0.813
Lgra_2381
Calcium-transporting ATPase.
  
  0.806
Lgra_2875
Sphingomyelin phosphodiesterase.
  
 
   0.803
smc_2
Chromosome partition protein Smc.
  
 
  0.794
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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