STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_2886Hypothetical protein. (438 aa)    
Predicted Functional Partners:
Lgra_2291
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
     0.678
Lgra_2885
Hypothetical protein.
       0.549
Lgra_0516
Hypothetical protein.
  
    0.538
Lgra_0898
Transmembrane protein.
  
     0.531
Lgra_1729
Tubulin-tyrosine ligase family protein.
  
     0.520
ptp
Serine carboxypeptidase.
  
     0.501
lysAC
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.468
DWF
7-dehydrocholesterol reductase.
  
     0.467
legL1
Gala protein type 1, 3 or 4.
  
     0.466
Lgra_2199
GH3 auxin-responsive promoter.
  
     0.464
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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