STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_2913General secretion pathway protein C. (169 aa)    
Predicted Functional Partners:
lspD
Type II protein secretion LspD.
 
 
 0.935
Lgra_2914
Sel-1 protein.
 
     0.885
Lgra_1223
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.822
lspI
Type II secretory pathway protein LspI.
 
  
 0.806
lspK
Type II secretory pathway protein LspK.
 
  
 0.801
Lgra_1224
General secretion pathway protein.
 
   
 0.795
lspJ
Type II secretory pathway protein LspJ.
 
  
 0.769
lspH
Type II secretory pathway protein LspH.
 
  
 0.756
ydgA
Putative membrane protein YdgA-like protein.
  
     0.677
Lgra_2787
Ankyrin repeat protein.
  
     0.676
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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