Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_2980 | Lgra_2981 | Lgra_2980 | Lgra_2981 | Transmembrane protein. | Hypothetical protein. | 0.770 |
Lgra_2980 | queA | Lgra_2980 | Lgra_2978 | Transmembrane protein. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.477 |
Lgra_2980 | tgt_2 | Lgra_2980 | Lgra_2979 | Transmembrane protein. | Queuine tRNA-ribosyltransferase. | 0.496 |
Lgra_2981 | Lgra_2980 | Lgra_2981 | Lgra_2980 | Hypothetical protein. | Transmembrane protein. | 0.770 |
Lgra_2981 | queA | Lgra_2981 | Lgra_2978 | Hypothetical protein. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.440 |
Lgra_2981 | tgt_2 | Lgra_2981 | Lgra_2979 | Hypothetical protein. | Queuine tRNA-ribosyltransferase. | 0.458 |
queA | Lgra_2980 | Lgra_2978 | Lgra_2980 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Transmembrane protein. | 0.477 |
queA | Lgra_2981 | Lgra_2978 | Lgra_2981 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Hypothetical protein. | 0.440 |
queA | tgt_2 | Lgra_2978 | Lgra_2979 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Queuine tRNA-ribosyltransferase. | 0.986 |
tgt_2 | Lgra_2980 | Lgra_2979 | Lgra_2980 | Queuine tRNA-ribosyltransferase. | Transmembrane protein. | 0.496 |
tgt_2 | Lgra_2981 | Lgra_2979 | Lgra_2981 | Queuine tRNA-ribosyltransferase. | Hypothetical protein. | 0.458 |
tgt_2 | queA | Lgra_2979 | Lgra_2978 | Queuine tRNA-ribosyltransferase. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.986 |