STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_2992Hypothetical protein. (373 aa)    
Predicted Functional Partners:
Lgra_2991
Hypothetical protein.
     0.959
kshA
Rieske 2Fe-2S domain protein.
 
     0.840
Lgra_0421
Coenzyme F390 synthetase FtsA.
 
     0.685
ahlD
Zn-dependent hydrolase GumP.
 
   
 0.629
sseJ
Lipolytic enzyme, GDSL family.
  
     0.547
Lgra_2200
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
     0.490
Lgra_2989
Chaperone protein DnaJ.
       0.478
plaC
Lysophospholipase A.
  
     0.462
argF
Ornithine carbamoyltransferase.
    
  0.434
Lgra_1564
FtsX-like permease family protein.
  
     0.424
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.