Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_3064 | copA2 | Lgra_3064 | Lgra_3065 | Hypothetical protein. | Copper efflux ATPase. | 0.784 |
Lgra_3345 | copA | Lgra_3345 | Lgra_2076 | Hypothetical protein. | Copper efflux ATPase. | 0.985 |
Lgra_3345 | copA2 | Lgra_3345 | Lgra_3065 | Hypothetical protein. | Copper efflux ATPase. | 0.714 |
copA | Lgra_3345 | Lgra_2076 | Lgra_3345 | Copper efflux ATPase. | Hypothetical protein. | 0.985 |
copA | copA2 | Lgra_2076 | Lgra_3065 | Copper efflux ATPase. | Copper efflux ATPase. | 0.755 |
copA | copA_1 | Lgra_2076 | Lgra_0684 | Copper efflux ATPase. | Cation transport ATPase. | 0.688 |
copA | coxB | Lgra_2076 | Lgra_1116 | Copper efflux ATPase. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.781 |
copA | cyc | Lgra_2076 | Lgra_2921 | Copper efflux ATPase. | Cytochrome c5. | 0.645 |
copA | cycB | Lgra_2076 | Lgra_0717 | Copper efflux ATPase. | Cytochrome c5. | 0.645 |
copA | guaA | Lgra_2076 | Lgra_2459 | Copper efflux ATPase. | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.617 |
copA | pacS | Lgra_2076 | Lgra_0863 | Copper efflux ATPase. | Cation transport ATPase. | 0.713 |
copA | tatC | Lgra_2076 | Lgra_1142 | Copper efflux ATPase. | Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.667 |
copA2 | Lgra_3064 | Lgra_3065 | Lgra_3064 | Copper efflux ATPase. | Hypothetical protein. | 0.784 |
copA2 | Lgra_3345 | Lgra_3065 | Lgra_3345 | Copper efflux ATPase. | Hypothetical protein. | 0.714 |
copA2 | copA | Lgra_3065 | Lgra_2076 | Copper efflux ATPase. | Copper efflux ATPase. | 0.755 |
copA2 | copA_1 | Lgra_3065 | Lgra_0684 | Copper efflux ATPase. | Cation transport ATPase. | 0.585 |
copA2 | coxB | Lgra_3065 | Lgra_1116 | Copper efflux ATPase. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.765 |
copA2 | cyc | Lgra_3065 | Lgra_2921 | Copper efflux ATPase. | Cytochrome c5. | 0.645 |
copA2 | cycB | Lgra_3065 | Lgra_0717 | Copper efflux ATPase. | Cytochrome c5. | 0.645 |
copA2 | guaA | Lgra_3065 | Lgra_2459 | Copper efflux ATPase. | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.593 |
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