Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_3078 | Lgra_3079 | Lgra_3078 | Lgra_3079 | Hypothetical protein. | Transposase Tn3. | 0.991 |
Lgra_3078 | Lgra_3080 | Lgra_3078 | Lgra_3080 | Hypothetical protein. | Tn3 transposase DDE domain protein. | 0.809 |
Lgra_3078 | fimB_2 | Lgra_3078 | Lgra_3077 | Hypothetical protein. | Type 1 fimbriae regulatory protein FimB. | 0.687 |
Lgra_3079 | Lgra_3078 | Lgra_3079 | Lgra_3078 | Transposase Tn3. | Hypothetical protein. | 0.991 |
Lgra_3079 | Lgra_3080 | Lgra_3079 | Lgra_3080 | Transposase Tn3. | Tn3 transposase DDE domain protein. | 0.909 |
Lgra_3079 | fimB_2 | Lgra_3079 | Lgra_3077 | Transposase Tn3. | Type 1 fimbriae regulatory protein FimB. | 0.600 |
Lgra_3080 | Lgra_3078 | Lgra_3080 | Lgra_3078 | Tn3 transposase DDE domain protein. | Hypothetical protein. | 0.809 |
Lgra_3080 | Lgra_3079 | Lgra_3080 | Lgra_3079 | Tn3 transposase DDE domain protein. | Transposase Tn3. | 0.909 |
Lgra_3080 | fimB_2 | Lgra_3080 | Lgra_3077 | Tn3 transposase DDE domain protein. | Type 1 fimbriae regulatory protein FimB. | 0.436 |
fimB_1 | fimB_2 | Lgra_0070 | Lgra_3077 | Type 1 fimbriae regulatory protein FimB. | Type 1 fimbriae regulatory protein FimB. | 0.769 |
fimB_1 | xerC_3 | Lgra_0070 | Lgra_0253 | Type 1 fimbriae regulatory protein FimB. | Hypothetical protein. | 0.743 |
fimB_2 | Lgra_3078 | Lgra_3077 | Lgra_3078 | Type 1 fimbriae regulatory protein FimB. | Hypothetical protein. | 0.687 |
fimB_2 | Lgra_3079 | Lgra_3077 | Lgra_3079 | Type 1 fimbriae regulatory protein FimB. | Transposase Tn3. | 0.600 |
fimB_2 | Lgra_3080 | Lgra_3077 | Lgra_3080 | Type 1 fimbriae regulatory protein FimB. | Tn3 transposase DDE domain protein. | 0.436 |
fimB_2 | fimB_1 | Lgra_3077 | Lgra_0070 | Type 1 fimbriae regulatory protein FimB. | Type 1 fimbriae regulatory protein FimB. | 0.769 |
fimB_2 | xerC_1 | Lgra_3077 | Lgra_3366 | Type 1 fimbriae regulatory protein FimB. | Site specific recombinase; Belongs to the 'phage' integrase family. | 0.767 |
fimB_2 | xerC_3 | Lgra_3077 | Lgra_0253 | Type 1 fimbriae regulatory protein FimB. | Hypothetical protein. | 0.760 |
xerC_1 | fimB_2 | Lgra_3366 | Lgra_3077 | Site specific recombinase; Belongs to the 'phage' integrase family. | Type 1 fimbriae regulatory protein FimB. | 0.767 |
xerC_3 | fimB_1 | Lgra_0253 | Lgra_0070 | Hypothetical protein. | Type 1 fimbriae regulatory protein FimB. | 0.743 |
xerC_3 | fimB_2 | Lgra_0253 | Lgra_3077 | Hypothetical protein. | Type 1 fimbriae regulatory protein FimB. | 0.760 |