Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
phbC_3Polyhydroxyalkanoic synthase. (597 aa)    
Predicted Functional Partners:
pta
Phosphate acetyl/butaryl transferase.
 
 0.907
Lgra_2359
Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.839
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.773
phaB_3
Acetoacetyl CoA reductase.
  
  
  0.732
Lgra_0331
Phospholipase, patatin family.
  
     0.715
fabG_2
3-oxoacyl-ACP reductase.
  
  
  0.715
fabG_7
Acetyoacetyl CoA reductase.
  
  
  0.677
fabG_1
3-oxoacyl-ACP reductase.
  
  
  0.664
phbC_1-2
Poly-beta-hydroxybutyrate synthase.
  
  
 
0.634
yfcX
Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.621
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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