Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0453 | Lgra_3137 | Lgra_0453 | Lgra_3137 | Glutamine amidotransferase. | 3',5'-cyclic-nucleotide phosphodiesterase. | 0.518 |
Lgra_2360 | Lgra_3137 | Lgra_2360 | Lgra_3137 | Hypothetical protein. | 3',5'-cyclic-nucleotide phosphodiesterase. | 0.461 |
Lgra_3137 | Lgra_0453 | Lgra_3137 | Lgra_0453 | 3',5'-cyclic-nucleotide phosphodiesterase. | Glutamine amidotransferase. | 0.518 |
Lgra_3137 | Lgra_2360 | Lgra_3137 | Lgra_2360 | 3',5'-cyclic-nucleotide phosphodiesterase. | Hypothetical protein. | 0.461 |
Lgra_3137 | WipB_1 | Lgra_3137 | Lgra_3136 | 3',5'-cyclic-nucleotide phosphodiesterase. | Hypothetical protein. | 0.443 |
Lgra_3137 | cya | Lgra_3137 | Lgra_0413 | 3',5'-cyclic-nucleotide phosphodiesterase. | Guanylate cyclase. | 0.646 |
Lgra_3137 | cyaA_1 | Lgra_3137 | Lgra_1089 | 3',5'-cyclic-nucleotide phosphodiesterase. | Guanylate cyclase. | 0.728 |
Lgra_3137 | cyaA_2 | Lgra_3137 | Lgra_1965 | 3',5'-cyclic-nucleotide phosphodiesterase. | Guanylate cyclase. | 0.491 |
Lgra_3137 | cyaA_3 | Lgra_3137 | Lgra_3380 | 3',5'-cyclic-nucleotide phosphodiesterase. | Guanylate cyclase. | 0.662 |
Lgra_3137 | cyaB | Lgra_3137 | Lgra_1439 | 3',5'-cyclic-nucleotide phosphodiesterase. | Guanylate/adenylate cyclase. | 0.709 |
Lgra_3137 | gmr_1 | Lgra_3137 | Lgra_2086 | 3',5'-cyclic-nucleotide phosphodiesterase. | Inner membrane protein. | 0.434 |
Lgra_3137 | ycdT | Lgra_3137 | Lgra_0159 | 3',5'-cyclic-nucleotide phosphodiesterase. | Diguanylate kinase. | 0.654 |
WipB_1 | Lgra_3137 | Lgra_3136 | Lgra_3137 | Hypothetical protein. | 3',5'-cyclic-nucleotide phosphodiesterase. | 0.443 |
cya | Lgra_3137 | Lgra_0413 | Lgra_3137 | Guanylate cyclase. | 3',5'-cyclic-nucleotide phosphodiesterase. | 0.646 |
cya | cyaA_1 | Lgra_0413 | Lgra_1089 | Guanylate cyclase. | Guanylate cyclase. | 0.766 |
cya | cyaA_2 | Lgra_0413 | Lgra_1965 | Guanylate cyclase. | Guanylate cyclase. | 0.426 |
cya | cyaA_3 | Lgra_0413 | Lgra_3380 | Guanylate cyclase. | Guanylate cyclase. | 0.821 |
cya | cyaB | Lgra_0413 | Lgra_1439 | Guanylate cyclase. | Guanylate/adenylate cyclase. | 0.928 |
cya | gmr_1 | Lgra_0413 | Lgra_2086 | Guanylate cyclase. | Inner membrane protein. | 0.860 |
cya | ycdT | Lgra_0413 | Lgra_0159 | Guanylate cyclase. | Diguanylate kinase. | 0.773 |
page 1 of 4