Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_3151 | Lgra_3152 | Lgra_3151 | Lgra_3152 | Putative transmembrane protein. | ABC transporter permease. | 0.953 |
Lgra_3151 | Lgra_3153 | Lgra_3151 | Lgra_3153 | Putative transmembrane protein. | Carotenoid cleavage oxygenase. | 0.428 |
Lgra_3152 | Lgra_3151 | Lgra_3152 | Lgra_3151 | ABC transporter permease. | Putative transmembrane protein. | 0.953 |
Lgra_3152 | Lgra_3153 | Lgra_3152 | Lgra_3153 | ABC transporter permease. | Carotenoid cleavage oxygenase. | 0.446 |
Lgra_3153 | Lgra_3151 | Lgra_3153 | Lgra_3151 | Carotenoid cleavage oxygenase. | Putative transmembrane protein. | 0.428 |
Lgra_3153 | Lgra_3152 | Lgra_3153 | Lgra_3152 | Carotenoid cleavage oxygenase. | ABC transporter permease. | 0.446 |
Lgra_3153 | dnaK | Lgra_3153 | Lgra_2296 | Carotenoid cleavage oxygenase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.458 |
Lgra_3153 | kshA | Lgra_3153 | Lgra_2990 | Carotenoid cleavage oxygenase. | Rieske 2Fe-2S domain protein. | 0.602 |
Lgra_3153 | ptlI | Lgra_3153 | Lgra_0519 | Carotenoid cleavage oxygenase. | Pentalenene oxygenase. | 0.452 |
Lgra_3153 | puo_2 | Lgra_3153 | Lgra_0872 | Carotenoid cleavage oxygenase. | Amine oxidase. | 0.416 |
Lgra_3153 | tcmN_1 | Lgra_3153 | Lgra_0574 | Carotenoid cleavage oxygenase. | O-methyltransferase. | 0.467 |
Lgra_3153 | udk_1 | Lgra_3153 | Lgra_1278 | Carotenoid cleavage oxygenase. | Uridine kinase. | 0.542 |
Lgra_3153 | udk_2 | Lgra_3153 | Lgra_1646 | Carotenoid cleavage oxygenase. | Uridine kinase. | 0.483 |
Lgra_3153 | yddA | Lgra_3153 | Lgra_1616 | Carotenoid cleavage oxygenase. | ABC transporter. | 0.630 |
dnaK | Lgra_3153 | Lgra_2296 | Lgra_3153 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Carotenoid cleavage oxygenase. | 0.458 |
dnaK | ptlI | Lgra_2296 | Lgra_0519 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Pentalenene oxygenase. | 0.659 |
dnaK | udk_1 | Lgra_2296 | Lgra_1278 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Uridine kinase. | 0.402 |
dnaK | udk_2 | Lgra_2296 | Lgra_1646 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Uridine kinase. | 0.402 |
kshA | Lgra_3153 | Lgra_2990 | Lgra_3153 | Rieske 2Fe-2S domain protein. | Carotenoid cleavage oxygenase. | 0.602 |
kshA | ptlI | Lgra_2990 | Lgra_0519 | Rieske 2Fe-2S domain protein. | Pentalenene oxygenase. | 0.738 |
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