Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ywtG_2D-xylose proton symporter. (432 aa)    
Predicted Functional Partners:
Lgra_3155
HD domain protein.
       0.785
Lgra_3156
phytanoyl-CoA dioxygenase.
       0.785
proP_2
Major facilitator family transporter.
  
  
  0.527
tphA
Hypothetical protein.
  
     0.485
yveA_3
Amino acid permease family protein.
  
     0.457
tphB
Proline/glycine betaine transporter-like protein.
  
   
 0.456
yveA_4
Amino acid permease.
  
     0.415
Lgra_3158
Hypothetical protein.
       0.413
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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