Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_3185Hypothetical protein. (247 aa)    
Predicted Functional Partners:
Lgra_3186
Hypothetical protein.
  
    0.846
Lgra_3184
Hypothetical protein.
       0.842
Lgra_2224
Pre-pilin leader sequence (pilV).
  
  
 0.726
Lgra_3389
Type IV fimbrial biogenesis PilY1-like protein.
  
  
 0.711
Lgra_2222
Tfp pilus assembly protein PilX.
  
  
 0.671
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.664
pilE_1
Type-IV pilin.
  
  
 0.661
Lgra_3188
Pterin-4-alpha-carbinolamine dehydratase.
       0.660
mltA_2
Membrane-bound lytic murein transglycosylase; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
       0.650
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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