STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dcyD1-aminocyclopropane-1-carboxylate deaminase. (308 aa)    
Predicted Functional Partners:
yaaA
Hypothetical protein; Belongs to the UPF0246 family.
       0.825
Lgra_3232
Hypothetical protein.
       0.798
glnA
Glutamine synthetase.
       0.793
Lgra_2054
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.694
lspF
Type II secretory pathway protein LspF.
       0.668
metB
Cystathionine beta-lyase.
     
 0.662
htpG
Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.
       0.658
pdhB_2
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
     
  0.646
iraA
Small-molecule methyltransferase IraA.
  
  
  0.585
Lgra_1384
Aspartate aminotransferase.
     
  0.569
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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