Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_3240Sel1 repeat protein. (375 aa)    
Predicted Functional Partners:
Lgra_2421
Ras family protein.
 
 
   0.543
pmbA
Peptide maturation protein PmbA.
       0.458
putA
Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.457
Lgra_1543
Protein phosphatase 2C.
 
 
   0.438
Lgra_2914
Sel-1 protein.
  
     0.435
Lgra_0492
PPR repeat protein.
 
 
 
 0.433
Lgra_2849
PPR repeat protein.
 
 
 
 0.428
bvgS
Sensory box histidine kinase/response regulator.
   
 0.420
arcB_3
Sensory histidine-kinase / response regulator.
   
 0.420
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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