Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lptCLipopolysaccharide export system protein LptC. (190 aa)    
Predicted Functional Partners:
lptB
Lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily protein.
  
 0.999
lptA
OstA family protein.
 
 
 0.998
lptG
Hypothetical protein.
 
 
 0.967
lptF
Hypothetical protein.
 
 
 0.966
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.922
kdsD
Arabinose 5-phosphate isomerase.
  
  
 0.879
yrbF
Toluene transporter subunit: ATP-binding component of ABC superfamily protein.
     
 0.750
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
  
  
 0.747
trpG
Anthranilate synthase component II.
       0.721
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
       0.721
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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