Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_3277Neurogenic locus notch like protein precursor. (116 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
    
   0.857
thiD
Bifunctional hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase.
       0.823
dotD
Lipoprotein DotD.
    
   0.787
dotC
Defect in organelle trafficking lipoprotein DotC.
    
   0.787
Lgra_1068
Hypothetical protein.
    
   0.787
yiaD
Lipoprotein.
    
   0.787
lphA
LphA (DotK).
    
   0.787
Lgra_2715
IcmK protein.
    
   0.787
dotF
Component of the Dot/Icm secretion system.
    
   0.787
Lgra_3276
AraC family transcriptional regulator.
       0.621
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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