STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgra_3389Type IV fimbrial biogenesis PilY1-like protein. (1226 aa)    
Predicted Functional Partners:
Lgra_2223
Tfp pilus assembly protein PilW.
 
  
 0.978
Lgra_2222
Tfp pilus assembly protein PilX.
 
  
 0.975
Lgra_2224
Pre-pilin leader sequence (pilV).
 
  
 0.970
pilE_1
Type-IV pilin.
 
  
 0.955
pilN
Tfp pilus assembly protein PilN.
 
  
 0.784
Lgra_1219
Transmembrane protein.
 
   
 0.762
pilO
Tfp pilus assembly protein PilO.
  
  
 0.762
pilP
Tfp pilus assembly protein PilP.
  
  
 0.749
traI_2
Putative conjugative transfer protein TraI.
  
     0.726
Lgra_0950
Hypothetical protein.
  
     0.725
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.