Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Llan_0280Hypothetical protein. (326 aa)    
Predicted Functional Partners:
Llan_0279
Hypothetical protein.
 
    
0.828
Llan_0278
Putative aminoglycoside phosphotransferase.
       0.794
Llan_1223
Putative Methyltransferase.
  
     0.637
grpB
Glutamate rich protein GrpB.
 
    0.582
Llan_2151
SET domain protein.
  
     0.524
Llan_0114
GNAT family acetyltransferase.
  
     0.522
OsmY_1
Osmotically inducible protein Y.
  
     0.472
Llan_0785
TraX protein.
  
     0.459
brnQ
Branched-chain amino acid transport system 2 carrier protein; Component of the transport system for branched-chain amino acids.
  
     0.448
Llan_1323
Two component response regulator.
  
     0.437
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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