Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PilE1Fimbrial protein, type IV pilin, PilE; Belongs to the N-Me-Phe pilin family. (135 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.683
pilE
Type-IV pilin.
 
   
 0.554
Llan_0604
Ankyrin repeat-containing protein.
    
   0.533
bolA
Protein BolA; Belongs to the BolA/IbaG family.
       0.457
Llan_0731
Hypothetical protein.
       0.457
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.416
pilO
Tfp pilus assembly protein PilO.
  
   
 0.410
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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