STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
sufSSelenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (414 aa)    
Predicted Functional Partners:
SufC
ATP transporter ATP- binding protein.
 
  
 0.985
nifU
Nitrogen fixation protein NifU.
 
 
 0.984
SufD
ABC transporter permease.
 
 
 0.982
SufB
Cysteine desulfurase.
 
 
 0.982
Llan_0759
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.922
Csd_1
Aminotransferase class V.
  
  
 
0.918
trxB
Thioredoxin reductase.
  
 
  0.905
NifU_1
Putative iron-sulpher cluster proteins NifU.
  
 0.888
poxA
lysyl-tRNA synthetase.
       0.835
NsrR
Rrf2 family transporter protein.
       0.835
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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