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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Llan_0959Transcriptional regulator, ArsR family. (99 aa)    
Predicted Functional Partners:
NemA
NADH-dependent flavin oxidoreductase, Oye family.
       0.640
lidA_2
Dot/Icm system substrate protein LidA.
       0.534
Llan_1878
YheO-like PAS domain protein.
  
     0.518
Llan_0956
Hypothetical protein.
       0.453
Llan_0957
Hypothetical protein.
       0.453
YnaI
Cyclic nucleotide-binding protein.
  
  
 0.444
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.437
Llan_0109
Short chain dehydrogenase.
  
     0.410
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.