Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Llan_1900O-antigen biosynthesis protein. (405 aa)    
Predicted Functional Partners:
Llan_1636
O-antigen biosynthesis protein.
  
  
 
0.918
RfaF
Glycosyltransferase.
  
 
 0.917
WaaA
3-deoxy-D-manno-oct-2-ulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.909
SunS
Lipopolysaccharide biosynthesis glycosyltransferase.
 
  
 0.887
SpkB
Protein IcmE (DotG).
 
    0.739
dotA
Defect in organelle trafficking protein DotA.
  
     0.732
Llan_2093
IcmJ protein.
  
     0.709
enhA_5
Enhanced entry protein EnhA.
  
    0.707
ClpA
ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.
  
    0.682
Llan_2107
IcmT protein.
  
     0.675
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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