STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lmxF_2RND multidrug efflux transporter MexF. (1069 aa)    
Predicted Functional Partners:
BepF_3
RND multidrug efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.978
BepF_2
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.973
OprM
Outer membrane efflux protein.
 
 0.972
acrA
Acriflavin resistance protein E; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.970
BepF_4
Efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.969
TtgC
Outer membrane efflux protein.
 
  0.940
MdtP
Outer membrane efflux lipoprotein.
 0.937
TolC_1
Outer membrane protein TolC.
  
 0.930
TolC_2
Outer membrane efflux protein.
  
  0.921
BepF_1
HlyD family transporter secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.881
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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