Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Llan_1999 | Llan_2000 | Llan_1999 | Llan_2000 | Hypothetical protein. | Hypothetical protein. | 0.800 |
Llan_1999 | TtgC | Llan_1999 | Llan_2002 | Hypothetical protein. | Outer membrane efflux protein. | 0.801 |
Llan_1999 | YibH_2 | Llan_1999 | Llan_2001 | Hypothetical protein. | Multidrug resistance efflux pump PmrA. | 0.807 |
Llan_1999 | relA | Llan_1999 | Llan_2003 | Hypothetical protein. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.401 |
Llan_1999 | rumA | Llan_1999 | Llan_2004 | Hypothetical protein. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.401 |
Llan_2000 | Llan_1999 | Llan_2000 | Llan_1999 | Hypothetical protein. | Hypothetical protein. | 0.800 |
Llan_2000 | TtgC | Llan_2000 | Llan_2002 | Hypothetical protein. | Outer membrane efflux protein. | 0.800 |
Llan_2000 | YibH_2 | Llan_2000 | Llan_2001 | Hypothetical protein. | Multidrug resistance efflux pump PmrA. | 0.800 |
Llan_2000 | relA | Llan_2000 | Llan_2003 | Hypothetical protein. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.401 |
Llan_2000 | rumA | Llan_2000 | Llan_2004 | Hypothetical protein. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.401 |
TtgC | Llan_1999 | Llan_2002 | Llan_1999 | Outer membrane efflux protein. | Hypothetical protein. | 0.801 |
TtgC | Llan_2000 | Llan_2002 | Llan_2000 | Outer membrane efflux protein. | Hypothetical protein. | 0.800 |
TtgC | YibH_2 | Llan_2002 | Llan_2001 | Outer membrane efflux protein. | Multidrug resistance efflux pump PmrA. | 0.961 |
TtgC | relA | Llan_2002 | Llan_2003 | Outer membrane efflux protein. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.401 |
TtgC | rumA | Llan_2002 | Llan_2004 | Outer membrane efflux protein. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.401 |
YibH_2 | Llan_1999 | Llan_2001 | Llan_1999 | Multidrug resistance efflux pump PmrA. | Hypothetical protein. | 0.807 |
YibH_2 | Llan_2000 | Llan_2001 | Llan_2000 | Multidrug resistance efflux pump PmrA. | Hypothetical protein. | 0.800 |
YibH_2 | TtgC | Llan_2001 | Llan_2002 | Multidrug resistance efflux pump PmrA. | Outer membrane efflux protein. | 0.961 |
YibH_2 | relA | Llan_2001 | Llan_2003 | Multidrug resistance efflux pump PmrA. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.413 |
YibH_2 | rumA | Llan_2001 | Llan_2004 | Multidrug resistance efflux pump PmrA. | 23S rRNA 5-methyluridine methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.401 |
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