STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lssD_2Secretion system protein D. (379 aa)    
Predicted Functional Partners:
ApxIB_3
Toxin secretion ATP binding protein.
 
 0.974
ApxIB_1
Hypothetical protein.
 
 0.886
HlyB
Hypothetical protein.
 
 
 0.875
BepC
Agglutination protein.
 
 
 0.870
Llan_0074
Periplasmic protein.
 
  
 0.770
PrsD
Toxin secretion ATP binding protein.
 
  
 0.767
rtxA-1
Structural toxin protein RtxA.
 
  
 0.750
Llan_2486
Hypothetical protein.
 
     0.735
rtxA2_2
Structural toxin protein RtxA.
 
  
 0.710
rtxA2_1
Structural toxin protein RtxA.
 
    0.656
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.