Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Llan_2102Protein IcmO (DotL). (781 aa)    
Predicted Functional Partners:
Llan_2103
IcmP protein.
 
 
 
 0.996
Llan_2093
IcmJ protein.
 
 
 
 0.990
icmS
Protein IcmS.
   
 
 0.958
Llan_2098
IcmK protein.
 
   
 0.932
Llan_2099
Protein IcmL (DotI).
 
   
 0.927
Llan_2107
IcmT protein.
 
   
 0.915
icmW
Intracellular multiplication protein IcmW.
    
 
 0.914
SpkB
Protein IcmE (DotG).
 
 
 
 0.910
Llan_0928
Hypothetical protein.
    
   0.885
dotC
Defect in organelle trafficking lipoprotein DotC.
 
   
 0.861
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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