Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
icmQIcmQ protein. (197 aa)    
Predicted Functional Partners:
Llan_2103
IcmP protein.
     
 0.851
icmS
Protein IcmS.
     
 0.825
Llan_2102
Protein IcmO (DotL).
     
 0.758
Llan_2107
IcmT protein.
     
 0.701
icmM/dotJ
Component of the Dot/Icm secretion system, predicted inner membrane protein.
     
 0.666
Llan_2099
Protein IcmL (DotI).
     
 0.641
Llan_2092
Protein IcmB (DotO).
     
 0.618
SpkB
Protein IcmE (DotG).
     
 0.604
Llan_2098
IcmK protein.
     
 0.601
lphA
LphA (DotK).
     
 0.599
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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