Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AmyA_2Hypothetical protein. (226 aa)    
Predicted Functional Partners:
PotE_1
Amino acid transporter PotE.
   
  0.416
SteT
Amino acid ABC transporter system permease.
   
  0.416
GadC_1
Amino acid antiporter.
   
  0.416
GadC_2
Amino acid antiporter.
   
  0.416
gadC
Glutamate/gamma-aminobutyrate antiporter.
   
  0.416
yveA
Aspartate-proton symporter.
   
  0.416
YbaT
Amino acid transporter.
   
  0.416
PotE_2
Amino acid antiporter.
   
  0.416
PotE_3
Amino acid transporter PotE.
   
  0.416
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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