Llan_2192 protein (Legionella lansingensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Llan_2192

LemA protein. (193 aa)

Predicted Functional Partners:

HtpX_1

0.843

Llan_2193

0.639

hss

0.495

uvrA

0.480

pheA

0.412

polX

0.412

thiDE

0.412

Your Current Organism:

Legionella lansingensis

NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HtpX_1	Llan_2192	Llan_2191	Llan_2192	Heat shock protein HtpX.	LemA protein.	0.843
HtpX_1	Llan_2193	Llan_2191	Llan_2193	Heat shock protein HtpX.	Hypothetical protein.	0.423
Llan_2192	HtpX_1	Llan_2192	Llan_2191	LemA protein.	Heat shock protein HtpX.	0.843
Llan_2192	Llan_2193	Llan_2192	Llan_2193	LemA protein.	Hypothetical protein.	0.639
Llan_2192	hss	Llan_2192	Llan_2194	LemA protein.	Homospermidine synthase.	0.495
Llan_2192	pheA	Llan_2192	Llan_0734	LemA protein.	P-protein.	0.412
Llan_2192	polX	Llan_2192	Llan_0982	LemA protein.	DNA polymerase/3'-5' exonuclease PolX.	0.412
Llan_2192	thiDE	Llan_2192	Llan_1589	LemA protein.	Bifunctional phosphomethylpyrimidine kinase ThiD/thiamin- phosphate pyrophosphorylase ThiE; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.	0.412
Llan_2192	uvrA	Llan_2192	Llan_2197	LemA protein.	Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	0.480
Llan_2193	HtpX_1	Llan_2193	Llan_2191	Hypothetical protein.	Heat shock protein HtpX.	0.423
Llan_2193	Llan_2192	Llan_2193	Llan_2192	Hypothetical protein.	LemA protein.	0.639
Llan_2193	hss	Llan_2193	Llan_2194	Hypothetical protein.	Homospermidine synthase.	0.606
hss	Llan_2192	Llan_2194	Llan_2192	Homospermidine synthase.	LemA protein.	0.495
hss	Llan_2193	Llan_2194	Llan_2193	Homospermidine synthase.	Hypothetical protein.	0.606
pheA	Llan_2192	Llan_0734	Llan_2192	P-protein.	LemA protein.	0.412
polX	Llan_2192	Llan_0982	Llan_2192	DNA polymerase/3'-5' exonuclease PolX.	LemA protein.	0.412
thiDE	Llan_2192	Llan_1589	Llan_2192	Bifunctional phosphomethylpyrimidine kinase ThiD/thiamin- phosphate pyrophosphorylase ThiE; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.	LemA protein.	0.412
uvrA	Llan_2192	Llan_2197	Llan_2192	Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	LemA protein.	0.480