Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Llan_2200Aromatic compounds catabolism. (156 aa)    
Predicted Functional Partners:
Llan_2201
Hypothetical protein.
 
     0.830
OsmY_1
Osmotically inducible protein Y.
       0.804
Llan_2202
Hypothetical protein.
       0.647
Llan_2198
Macrophage killing protein with similarity to conjugation protein.
       0.625
Llan_2205
N-formylglutamate amidohydrolase.
       0.619
uvrA
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.570
RimK_1
Ribosomal protein S6 modification protein.
       0.566
Llan_2204
Glutamate--cysteine ligase, GCS2.
       0.566
Llan_1613
Hypothetical protein.
  
     0.474
Llan_2437
IcmL-like protein.
  
     0.463
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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