Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
HspQPutative DNA-binding protein hemimethylated. (102 aa)    
Predicted Functional Partners:
Llan_2291
Hypothetical protein.
       0.709
Llan_0626
Ankyrin repeat-containing protein.
  
     0.553
iraA_1
Small-molecule methyltransferase IraA.
  
     0.488
Llan_1613
Hypothetical protein.
  
     0.479
Llan_2201
Hypothetical protein.
  
     0.475
GspH
General secretion pathway protein LspH.
  
     0.471
Llan_1567
Hypothetical protein.
  
     0.428
Llan_2287
Putative helicase/relaxase.
 
   
 0.422
Llan_0586
Integral membrane protein.
  
     0.416
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.412
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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