Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Llan_2500General secretion pathway protein C. (169 aa)    
Predicted Functional Partners:
lspD
Type II protein secretion LspD.
  
 
 0.859
Llan_2499
Sel-1 protein.
       0.779
lspI
Type II secretory pathway protein LspI.
  
  
 0.444
lspJ
Type II secretory pathway protein LspJ.
  
  
 0.426
lssD_3
Secretion system protein D.
       0.424
ApxIB_1
Hypothetical protein.
       0.417
HlyB
Hypothetical protein.
       0.417
metC
Cystathionine beta-lyase.
       0.400
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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