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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Llan_2500General secretion pathway protein C. (169 aa)    
Predicted Functional Partners:
lspD
Type II protein secretion LspD.
  
 
 0.947
Llan_2499
Sel-1 protein.
       0.777
lspI
Type II secretory pathway protein LspI.
  
  
 0.463
lspJ
Type II secretory pathway protein LspJ.
  
  
 0.446
Llan_0706
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
     
 0.424
lssD_3
Secretion system protein D.
       0.424
lspK
Type II secretory pathway protein.
  
  
 0.421
ApxIB_1
Hypothetical protein.
       0.417
HlyB
Hypothetical protein.
       0.417
lspG
Type II secretory pathway protein LspG.
  
  
 0.401
Your Current Organism:
Legionella lansingensis
NCBI taxonomy Id: 45067
Other names: ATCC 49751, CCUG 31227 B, CIP 103542, DSM 19556, L. lansingensis, NCTC 12830
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