Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Llon_0002Hypothetical protein; Belongs to the 'phage' integrase family. (298 aa)    
Predicted Functional Partners:
Llon_0003
Hypothetical protein.
  
  
 0.850
Llon_0008
Membrane protein.
  
     0.772
Llon_0009
Pilus retraction ATPase PilT.
  
     0.772
Llon_0010
TraU protein.
  
     0.772
Llon_0022
Bile acid beta-glucosidase.
  
     0.772
Llon_0013
Exported membrane protein.
  
     0.771
Llon_0014
Hypothetical protein.
  
     0.771
Llon_0020
Hypothetical protein.
  
     0.771
Llon_0011
Type IV secretory protein VirB4 component.
  
     0.770
Llon_0024
Hypothetical protein.
  
     0.770
Your Current Organism:
Legionella londiniensis
NCBI taxonomy Id: 45068
Other names: ATCC 49505, CCUG 44895, CIP 105269, L. londiniensis, NCTC 12374, NCTC:13722
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