Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Llon_0236 | Llon_0315 | Llon_0236 | Llon_0315 | Putative Ser/Thr protein kinase. | Hypothetical protein. | 0.526 |
Llon_0236 | Llon_0808 | Llon_0236 | Llon_0808 | Putative Ser/Thr protein kinase. | Glycosyl transferase, group 1. | 0.435 |
Llon_0236 | Llon_0813 | Llon_0236 | Llon_0813 | Putative Ser/Thr protein kinase. | Glycosyltransferase, group 1 family. | 0.435 |
Llon_0236 | Llon_0909 | Llon_0236 | Llon_0909 | Putative Ser/Thr protein kinase. | HAD-superfamily hydrolase. | 0.692 |
Llon_0236 | Llon_1454 | Llon_0236 | Llon_1454 | Putative Ser/Thr protein kinase. | Glycosyl hydrolase. | 0.496 |
Llon_0236 | Llon_1961 | Llon_0236 | Llon_1961 | Putative Ser/Thr protein kinase. | Putative helicase/relaxase. | 0.425 |
Llon_0236 | dnaX | Llon_0236 | Llon_0239 | Putative Ser/Thr protein kinase. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.476 |
Llon_0236 | recR | Llon_0236 | Llon_0237 | Putative Ser/Thr protein kinase. | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.561 |
Llon_0236 | treP | Llon_0236 | Llon_0908 | Putative Ser/Thr protein kinase. | Alpha,alpha-trehalose phosphorylase. | 0.526 |
Llon_0236 | ybaB | Llon_0236 | Llon_0238 | Putative Ser/Thr protein kinase. | Nucleoid-associated protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.561 |
Llon_0315 | Llon_0236 | Llon_0315 | Llon_0236 | Hypothetical protein. | Putative Ser/Thr protein kinase. | 0.526 |
Llon_0808 | Llon_0236 | Llon_0808 | Llon_0236 | Glycosyl transferase, group 1. | Putative Ser/Thr protein kinase. | 0.435 |
Llon_0808 | Llon_0813 | Llon_0808 | Llon_0813 | Glycosyl transferase, group 1. | Glycosyltransferase, group 1 family. | 0.923 |
Llon_0808 | Llon_0909 | Llon_0808 | Llon_0909 | Glycosyl transferase, group 1. | HAD-superfamily hydrolase. | 0.711 |
Llon_0813 | Llon_0236 | Llon_0813 | Llon_0236 | Glycosyltransferase, group 1 family. | Putative Ser/Thr protein kinase. | 0.435 |
Llon_0813 | Llon_0808 | Llon_0813 | Llon_0808 | Glycosyltransferase, group 1 family. | Glycosyl transferase, group 1. | 0.923 |
Llon_0813 | Llon_0909 | Llon_0813 | Llon_0909 | Glycosyltransferase, group 1 family. | HAD-superfamily hydrolase. | 0.711 |
Llon_0909 | Llon_0236 | Llon_0909 | Llon_0236 | HAD-superfamily hydrolase. | Putative Ser/Thr protein kinase. | 0.692 |
Llon_0909 | Llon_0808 | Llon_0909 | Llon_0808 | HAD-superfamily hydrolase. | Glycosyl transferase, group 1. | 0.711 |
Llon_0909 | Llon_0813 | Llon_0909 | Llon_0813 | HAD-superfamily hydrolase. | Glycosyltransferase, group 1 family. | 0.711 |
page 1 of 2