STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfJMembrane protein YdfJ. (741 aa)    
Predicted Functional Partners:
Lnau_0810
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.706
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
    
 
 0.629
Lnau_0809
Hypothetical protein.
       0.547
Lnau_0808
OmpA-like transmembrane domain protein.
       0.532
Lnau_2689
Inner membrane protein/sensory box protein LssE.
    
 
 0.497
Lnau_2808
Putative membrane protein YdgA-like protein.
  
     0.485
rkpA
Type I polyketide synthase WcbR.
   
 
 0.480
Lnau_1391
Cysteine protease.
  
     0.477
Lnau_0812
Hypothetical protein.
       0.461
Lnau_0512
Protein LvrA.
  
     0.444
Your Current Organism:
Legionella nautarum
NCBI taxonomy Id: 45070
Other names: ATCC 49506, CCUG 44900, CIP 105270, DSM 21805, L. nautarum, NCTC 12375, NCTC 12932
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.